Breaking the 1-μm Barrier with the Electron Diffractometer XtaLAB Synergy-ED
Sho Ito and Akihito Yamano
Winter 2022 Volume 38, No. 1 , 02-06
3D electron diffraction (3D ED)/Micro electron diffraction (MicroED) is a technique that can provide measurers with three-dimensional molecular structures from crystals of submicron order. However, 3D ED/Micro ED requires expertise in both electron microscopy and crystallography. Here, we introduce the newly developed electron diffractometer XtaLAB Synergy-ED specialized for 3D ED/MicroED experiments, its instrument configuration, measurement flow, and measurement examples.
Highlights
- Electron diffraction extends routine crystal structure determination below the practical 1 μm size limit of conventional single-crystal X-ray diffraction, enabling analysis of nanocrystals.
- A dedicated electron diffractometer with integrated software streamlines data collection and structure solution, making 3D electron diffraction accessible to crystallographers without extensive electron microscopy expertise.
- Rapid analysis of submicron crystals enables practical applications such as impurity identification and polymorph detection using less than 1 mg of sample and measurement times of approximately one minute per crystal.
Summary
Three-dimensional electron diffraction (3D ED), also known as MicroED, provides a practical solution for determining crystal structures from crystals that are too small for conventional single-crystal X-ray diffraction. By overcoming the approximate 1 μm crystal size limitation, the technique enables structural analysis of nanocrystalline materials that would otherwise remain inaccessible.
A dedicated electron diffractometer simplifies what has traditionally been a complex workflow requiring expertise in transmission electron microscopy. Optimized electron optics, a direct electron detector, and integrated software allow users to switch seamlessly between imaging and diffraction modes while automating instrument control, data collection, processing, and initial structure determination. Standard crystallographic refinement tools can then be used to complete the analysis. The workflow requires only small sample quantities and minimal preparation, making it suitable for routine laboratory use.
Performance data collected across more than one hundred successfully analyzed compounds demonstrate the technique's applicability to organic, organometallic, and inorganic materials. High data completeness can often be achieved by combining measurements from multiple crystals, particularly for lower-symmetry crystal systems where a wider angular range is required. Although refinement statistics are generally higher than those obtained with X-ray diffraction because of multiple scattering effects, the resulting structural models are sufficient for reliable structure determination across a broad range of materials.
Beyond routine crystal structure determination, electron diffraction is valuable for identifying trace crystalline impurities and distinguishing polymorphic phases. These capabilities are particularly important in pharmaceutical development, materials science, and quality control, where only very small sample quantities may be available and rapid structural characterization is essential. Continued advances in measurement automation and data processing are expected to further establish electron diffraction as a complementary technique alongside X-ray diffraction for structural analysis.
Frequently asked questions
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3D electron diffraction enables crystal structure determination from crystals that are smaller than approximately 1 μm, a size at which conventional single-crystal X-ray diffraction often becomes impractical. Because electrons interact much more strongly with matter than X-rays, nanometer-scale crystals can produce diffraction patterns suitable for structural analysis. This significantly expands the range of materials that can be characterized, including compounds that cannot be grown into larger crystals.
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A dedicated electron diffractometer is optimized specifically for diffraction rather than high-resolution imaging. Its electron optics minimize adjustments when switching between imaging and diffraction modes, while integrated software automates instrument control, data collection, processing, and structure solution. This reduces the amount of specialized electron microscopy expertise required and allows crystallographers to perform measurements using a workflow similar to conventional single-crystal X-ray diffraction.
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Sample preparation is straightforward and typically requires less than 1 mg of material. Fine crystals are dispersed onto an electron microscopy grid, and larger crystals can be gently crushed to reduce their thickness. For poorly crystalline materials, dissolving the sample and recrystallizing it directly on the grid may improve crystal quality. The most important consideration is crystal thickness, which should generally remain below 1 μm and may need to be substantially thinner for heavier inorganic materials.
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Yes. The technique has been successfully applied to organic compounds, organometallic complexes, and inorganic materials. Results from more than one hundred analyzed structures demonstrate that it is broadly applicable across diverse chemistries and crystal systems, making it useful in pharmaceutical, chemical, and materials research.
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Electron diffraction data are more strongly affected by multiple scattering because electrons interact much more strongly with matter than X-rays. Conventional refinement methods often assume kinematic scattering, which does not fully account for these effects, resulting in higher refinement residuals. Even so, the resulting structural models are generally accurate enough for reliable crystal structure determination, and ongoing improvements in refinement methods are expected to further improve data quality.
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Individual microcrystals within a heterogeneous sample can be analyzed separately, allowing minor crystalline components to be identified even when they are present in very small quantities. This makes electron diffraction valuable for investigating degradation products, contaminants, or unexpected phases that may not be apparent using bulk analytical techniques. Only a small amount of material is required for analysis.
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Electron diffraction can distinguish different crystalline polymorphs by determining their unique crystal structures and unit cell parameters. Because measurements require only nanocrystals and very small sample quantities, polymorph screening can be performed rapidly, even when only limited material is available. This capability is particularly valuable in pharmaceutical development and advanced materials research, where crystal form can significantly influence material properties and performance.
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